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- FAVA::xue_microbiome_sampleTemporal microbiome composition data
- FAVA::xue_species_infoTable of species information
- FAVA::xue_species_similaritySpecies similarity matrix for the species included in xue_microbiome_sample
- FAVA::xue_species_treePhylogenetic tree for the species included in xue_microbiome_sample
- sigvar::all_sig_palColor palette for mutational signatures analyzed in the study by Morrison et al.
- sigvar::carcinogens_mice_SBSSingle base substitution signature attributions found in mice exposed to 20 known or suspected carcinogens.
- sigvar::carcinogens_mice_SBS.refsReference single base substitution signatures found in mice exposed to 20 known or suspected carcinogens.
- sigvar::COSMIC3.0_IDIndel reference signatures for COSMIC3.0
- sigvar::COSMIC3.0_SBSSingle base substitution reference signatures for COSMIC3.0
- sigvar::COSMIC3.1_CNCopy Number reference signatures for COSMIC3.1
- sigvar::COSMIC3.3_CNCopy Number reference signatures for COSMIC3.3
- sigvar::COSMIC3.3_DBSDouble base reference signatures for COSMIC3.0
- sigvar::COSMIC3.3_DBS_mm10Mice Double base reference signatures for COSMIC3.0
- sigvar::COSMIC3.3_IDIndel reference signatures for COSMIC3.3.1
- sigvar::COSMIC3.3.1_SBSSingle base substitution reference signatures for COSMIC3.3.1
- sigvar::COSMIC3.3.1_SBS_mm10Mice Single base substitution reference signatures for COSMIC3.3.1
- sigvar::EGFR_context_counts_orderedCounts of each context class for the main transcript of gene EGFR
- sigvar::EGFR_drivers_intogen_SBS96SBS96 spectrum from the intogen website for gene EGFR in lung adenocarcinomas
- sigvar::ESCC_countries_SBSSingle base substitution signature attributions found in esophageal squamous cell carcinoma across countries with varying incidence.
- sigvar::ESCC_countries_SBS.refsReference COSMIC Single base substitution signatures found in esophageal squamous cell carcinoma across countries with varying incidence.
- sigvar::ESCC_sig_activityActivity of SBS, DBS, and ID mutational signatures in a global sample of esophageal squamous cell carcinoma cases.
- sigvar::ESCC_sig_similarityCosine similarity of SBS, DBS, and ID mutational signatures found in a global sample of esophageal squamous cell carcinoma cases.
- sigvar::Intogen_EGFR_LUADDriver mutations from the intogen website for gene EGFR in lung adenocarcinomas
- sigvar::MESOMICS_CN_SBSCopy Number and Single Base Substitution mutational signatures for 120 malignant pleural mesothelioma from the MESOMICS cohort
- sigvar::mutsig_carcinogens_mice_bootstrap_p_valsBootstrap p-values comparing SVA results for carcinogen-exposed murine tumors to spontaneous tumors
- sigvar::mutsig_carcinogens_mice_SBSSingle Base Substitution mutational signatures for 181 mice exposed to known or suspected carcinogens
- sigvar::mutsig_carcinogens_mice_SBS.refsDefinitions of murine single base substitution mutational signatures
- sigvar::PCAWG_SigProfiler_COSMIC_DBSDouble Base Substitution COSMIC mutational signatures for 2780 tumors
- sigvar::PCAWG_SigProfiler_COSMIC_IDIndel COSMIC mutational signatures for 2780 tumors
- sigvar::PCAWG_SigProfiler_COSMIC_SBSSingle Base Substitution COSMIC mutational signatures for 2780 tumors
- sigvar::radiation_sigs_mortonSingle base substitution signature attributions found in papillary thyroid carcinoma from Chernobyl incident survivors.
- sigvar::radiation_sigs_morton_cossimCosine similarity matrix of Single base substitution signatures found in papillary thyroid carcinoma from Chernobyl incident survivors.
- sigvar::rcc_sig_activityActivity of SBS, DBS, and ID mutational signatures in a global sample of renal cell carcinoma cases.
- sigvar::rcc_simActivity of SBS, DBS, and ID mutational signatures in a global sample of renal cell carcinoma cases.
- sigvar::sbs_paletteSingle Base Substitution COSMIC mutational signatures for 2780 tumors
- sigvar::Sherlock_LCINS_SBSSingle base substitution signature attributions found in Lung cancer in never smokers.
- sigvar::Sherlock_LCINS_SBS.refsReference COSMIC Single base substitution signatures found in Lung cancer in never smokers.
- sigvar::Sherlock_LCINS.metadataMetadata accompanying mutational signatures for lung cancer in never smokers.
- sigvar::smoker_sigs_chenActivity of Smoking, APOBEC, and Ageing mutational signatures in a sample of East Asian lung adenocarcinoma patients.
- sigvar::smoker_sigs_chen_cossimCosine similarity of smoking, APOBEC, and ageing mutational signatures found in a sample of East Asian lung adenocarcinoma patients.
- sigvar::TP53_context_counts_orderedCounts of each context class for the main transcript of gene TP53
- sigvar::TP53_drivers_intogen_LUADDriver mutations from the intogen website for gene TP53 in lung adenocarcinomas
- sigvar::TP53_drivers_intogen_SBS96SBS96 spectrum from the intogen website for gene TP53 in lung adenocarcinomas
- sigvar::zhang_sig_activityActivity of SBS mutational signatures in samples of lung cancer in never smokers
- sigvar::zhang_sig_similarityCosine similarity of SBS mutational signatures found in samples of lung cancer in never smokers
