Package: FAVA 1.0.9

Introduction | Overview | Data specifications | Optional: species similarity matrix | Example analysis | 0 - Example data | 1 - Visualize relative abundances | 2 - Compute unweighted FAVA | Compute unweighted FAVA with multiple groups | 3 - Compute weighted FAVA | 4 - Bootstrapping | 5 - Sliding windows | Compute FAVA for each window | Visualize FAVA in sliding windows | Conclusion | Supplemental materials | Generating a similarity matrix | (1) Convert a phylogenetic tree to a pairwise phylogenetic distance matrix | (2) Convert a pairwise phylogenetic distance matrix to a pairwise similarity matrix | (3) How do these transformations influence the value of FAVA? | When to normalize FAVA | When $I$ is small, which relative abundance matrices have $F_{ST}=1$? | In general, what is the upper bound on $F_{ST}$ conditional on $M$ and $I$? | Example